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2092 строки
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2092 строки
50 KiB
Plaintext
{
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"cells": [
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{
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"attachments": {},
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"cell_type": "markdown",
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"metadata": {},
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"source": [
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"# Image summary and visual question answering"
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]
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},
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{
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"attachments": {},
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"cell_type": "markdown",
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"metadata": {},
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"source": [
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"This notebooks shows how to generate image captions and use the visual question answering with [LAVIS](https://github.com/salesforce/LAVIS). \n",
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"\n",
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"The first cell is only run on google colab and installs the [ammico](https://github.com/ssciwr/AMMICO) package.\n",
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"\n",
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"After that, we can import `ammico` and read in the files given a folder path."
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]
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},
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{
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"cell_type": "code",
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"execution_count": 1,
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"metadata": {
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"execution": {
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"iopub.execute_input": "2023-07-03T12:15:15.869373Z",
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"iopub.status.busy": "2023-07-03T12:15:15.868830Z",
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"iopub.status.idle": "2023-07-03T12:15:15.880408Z",
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"shell.execute_reply": "2023-07-03T12:15:15.879864Z"
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}
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},
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"outputs": [],
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"source": [
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"# if running on google colab\n",
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"# flake8-noqa-cell\n",
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"import os\n",
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"\n",
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"if \"google.colab\" in str(get_ipython()):\n",
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" # update python version\n",
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" # install setuptools\n",
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" # %pip install setuptools==61 -qqq\n",
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" # install ammico\n",
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" %pip install git+https://github.com/ssciwr/ammico.git -qqq\n",
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" # mount google drive for data and API key\n",
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" from google.colab import drive\n",
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"\n",
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" drive.mount(\"/content/drive\")"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 2,
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"metadata": {
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"execution": {
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"iopub.execute_input": "2023-07-03T12:15:15.884713Z",
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"iopub.status.busy": "2023-07-03T12:15:15.883580Z",
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"iopub.status.idle": "2023-07-03T12:15:27.576198Z",
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"shell.execute_reply": "2023-07-03T12:15:27.575450Z"
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},
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"tags": []
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},
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"outputs": [],
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"source": [
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"import ammico\n",
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"from ammico import utils as mutils\n",
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"from ammico import display as mdisplay\n",
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"import ammico.summary as sm"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 3,
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"metadata": {
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"execution": {
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"iopub.execute_input": "2023-07-03T12:15:27.580324Z",
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"iopub.status.busy": "2023-07-03T12:15:27.579544Z",
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"iopub.status.idle": "2023-07-03T12:15:27.584950Z",
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"shell.execute_reply": "2023-07-03T12:15:27.584254Z"
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},
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"tags": []
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},
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"outputs": [],
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"source": [
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"# Here you need to provide the path to your google drive folder\n",
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"# or local folder containing the images\n",
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"images = mutils.find_files(\n",
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" path=\"data/\",\n",
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" limit=10,\n",
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")"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 4,
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"metadata": {
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"execution": {
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"iopub.execute_input": "2023-07-03T12:15:27.588006Z",
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"iopub.status.busy": "2023-07-03T12:15:27.587579Z",
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"iopub.status.idle": "2023-07-03T12:15:27.591065Z",
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"shell.execute_reply": "2023-07-03T12:15:27.590372Z"
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},
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"tags": []
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},
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"outputs": [],
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"source": [
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"mydict = mutils.initialize_dict(images)"
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]
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},
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{
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"attachments": {},
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"cell_type": "markdown",
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"metadata": {},
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"source": [
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"## Create captions for images and directly write to csv"
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]
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},
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{
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"attachments": {},
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"cell_type": "markdown",
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"metadata": {},
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"source": [
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"Here you can choose between two models: \"base\" or \"large\". This will generate the caption for each image and directly put the results in a dataframe. This dataframe can be exported as a csv file.\n",
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"\n",
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"The results are written into the columns `const_image_summary` - this will always be the same result (as always the same seed will be used). The column `3_non-deterministic summary` displays three different answers generated with different seeds, these are most likely different when you run the analysis again."
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]
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},
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{
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"iopub.status.idle": "2023-07-03T12:16:40.172662Z",
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"shell.execute_reply": "2023-07-03T12:16:40.168499Z"
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"tags": []
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}
|
|
],
|
|
"source": [
|
|
"obj = sm.SummaryDetector(mydict)\n",
|
|
"summary_model, summary_vis_processors = obj.load_model(model_type=\"base\")\n",
|
|
"# summary_model, summary_vis_processors = mutils.load_model(\"large\")"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "code",
|
|
"execution_count": 6,
|
|
"metadata": {
|
|
"execution": {
|
|
"iopub.execute_input": "2023-07-03T12:16:40.242070Z",
|
|
"iopub.status.busy": "2023-07-03T12:16:40.241013Z",
|
|
"iopub.status.idle": "2023-07-03T12:17:22.045870Z",
|
|
"shell.execute_reply": "2023-07-03T12:17:22.044528Z"
|
|
},
|
|
"tags": []
|
|
},
|
|
"outputs": [
|
|
{
|
|
"ename": "TypeError",
|
|
"evalue": "analyse_image() got an unexpected keyword argument 'summary_model'",
|
|
"output_type": "error",
|
|
"traceback": [
|
|
"\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
|
|
"\u001b[0;31mTypeError\u001b[0m Traceback (most recent call last)",
|
|
"Cell \u001b[0;32mIn[6], line 2\u001b[0m\n\u001b[1;32m 1\u001b[0m \u001b[38;5;28;01mfor\u001b[39;00m key \u001b[38;5;129;01min\u001b[39;00m mydict:\n\u001b[0;32m----> 2\u001b[0m mydict[key] \u001b[38;5;241m=\u001b[39m \u001b[43msm\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mSummaryDetector\u001b[49m\u001b[43m(\u001b[49m\u001b[43mmydict\u001b[49m\u001b[43m[\u001b[49m\u001b[43mkey\u001b[49m\u001b[43m]\u001b[49m\u001b[43m)\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43manalyse_image\u001b[49m\u001b[43m(\u001b[49m\n\u001b[1;32m 3\u001b[0m \u001b[43m \u001b[49m\u001b[43msummary_model\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43msummary_model\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43msummary_vis_processors\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43msummary_vis_processors\u001b[49m\n\u001b[1;32m 4\u001b[0m \u001b[43m \u001b[49m\u001b[43m)\u001b[49m\n",
|
|
"\u001b[0;31mTypeError\u001b[0m: analyse_image() got an unexpected keyword argument 'summary_model'"
|
|
]
|
|
}
|
|
],
|
|
"source": [
|
|
"for key in mydict:\n",
|
|
" mydict[key] = sm.SummaryDetector(mydict[key]).analyse_image(\n",
|
|
" summary_model=summary_model, summary_vis_processors=summary_vis_processors\n",
|
|
" )"
|
|
]
|
|
},
|
|
{
|
|
"attachments": {},
|
|
"cell_type": "markdown",
|
|
"metadata": {
|
|
"tags": []
|
|
},
|
|
"source": [
|
|
"Convert the dictionary of dictionarys into a dictionary with lists:"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "code",
|
|
"execution_count": 7,
|
|
"metadata": {
|
|
"execution": {
|
|
"iopub.execute_input": "2023-07-03T12:17:22.116389Z",
|
|
"iopub.status.busy": "2023-07-03T12:17:22.115755Z",
|
|
"iopub.status.idle": "2023-07-03T12:17:22.201902Z",
|
|
"shell.execute_reply": "2023-07-03T12:17:22.201122Z"
|
|
},
|
|
"tags": []
|
|
},
|
|
"outputs": [],
|
|
"source": [
|
|
"outdict = mutils.append_data_to_dict(mydict)\n",
|
|
"df = mutils.dump_df(outdict)"
|
|
]
|
|
},
|
|
{
|
|
"attachments": {},
|
|
"cell_type": "markdown",
|
|
"metadata": {},
|
|
"source": [
|
|
"Check the dataframe:"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "code",
|
|
"execution_count": 8,
|
|
"metadata": {
|
|
"execution": {
|
|
"iopub.execute_input": "2023-07-03T12:17:22.209403Z",
|
|
"iopub.status.busy": "2023-07-03T12:17:22.208643Z",
|
|
"iopub.status.idle": "2023-07-03T12:17:22.380663Z",
|
|
"shell.execute_reply": "2023-07-03T12:17:22.379447Z"
|
|
},
|
|
"tags": []
|
|
},
|
|
"outputs": [
|
|
{
|
|
"data": {
|
|
"text/html": [
|
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"<div>\n",
|
|
"<style scoped>\n",
|
|
" .dataframe tbody tr th:only-of-type {\n",
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" vertical-align: middle;\n",
|
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" }\n",
|
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"\n",
|
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" .dataframe tbody tr th {\n",
|
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|
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" }\n",
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"\n",
|
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" .dataframe thead th {\n",
|
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|
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" }\n",
|
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"</style>\n",
|
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|
|
" <thead>\n",
|
|
" <tr style=\"text-align: right;\">\n",
|
|
" <th></th>\n",
|
|
" <th>filename</th>\n",
|
|
" </tr>\n",
|
|
" </thead>\n",
|
|
" <tbody>\n",
|
|
" <tr>\n",
|
|
" <th>0</th>\n",
|
|
" <td>data/102141_2_eng.png</td>\n",
|
|
" </tr>\n",
|
|
" <tr>\n",
|
|
" <th>1</th>\n",
|
|
" <td>data/106349S_por.png</td>\n",
|
|
" </tr>\n",
|
|
" <tr>\n",
|
|
" <th>2</th>\n",
|
|
" <td>data/102730_eng.png</td>\n",
|
|
" </tr>\n",
|
|
" </tbody>\n",
|
|
"</table>\n",
|
|
"</div>"
|
|
],
|
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"text/plain": [
|
|
" filename\n",
|
|
"0 data/102141_2_eng.png\n",
|
|
"1 data/106349S_por.png\n",
|
|
"2 data/102730_eng.png"
|
|
]
|
|
},
|
|
"execution_count": 8,
|
|
"metadata": {},
|
|
"output_type": "execute_result"
|
|
}
|
|
],
|
|
"source": [
|
|
"df.head(10)"
|
|
]
|
|
},
|
|
{
|
|
"attachments": {},
|
|
"cell_type": "markdown",
|
|
"metadata": {},
|
|
"source": [
|
|
"Write the csv file:"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "code",
|
|
"execution_count": 9,
|
|
"metadata": {
|
|
"execution": {
|
|
"iopub.execute_input": "2023-07-03T12:17:22.400724Z",
|
|
"iopub.status.busy": "2023-07-03T12:17:22.400347Z",
|
|
"iopub.status.idle": "2023-07-03T12:17:22.446268Z",
|
|
"shell.execute_reply": "2023-07-03T12:17:22.445457Z"
|
|
}
|
|
},
|
|
"outputs": [],
|
|
"source": [
|
|
"df.to_csv(\"data_out.csv\")"
|
|
]
|
|
},
|
|
{
|
|
"attachments": {},
|
|
"cell_type": "markdown",
|
|
"metadata": {},
|
|
"source": [
|
|
"## Manually inspect the summaries\n",
|
|
"\n",
|
|
"To check the analysis, you can inspect the analyzed elements here. Loading the results takes a moment, so please be patient. If you are sure of what you are doing.\n",
|
|
"\n",
|
|
"`const_image_summary` - the permanent summarys, which does not change from run to run (analyse_image).\n",
|
|
"\n",
|
|
"`3_non-deterministic summary` - 3 different summarys examples that change from run to run (analyse_image). "
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "code",
|
|
"execution_count": 10,
|
|
"metadata": {
|
|
"execution": {
|
|
"iopub.execute_input": "2023-07-03T12:17:22.457026Z",
|
|
"iopub.status.busy": "2023-07-03T12:17:22.456349Z",
|
|
"iopub.status.idle": "2023-07-03T12:17:22.505670Z",
|
|
"shell.execute_reply": "2023-07-03T12:17:22.504858Z"
|
|
},
|
|
"tags": []
|
|
},
|
|
"outputs": [
|
|
{
|
|
"ename": "TypeError",
|
|
"evalue": "__init__() got an unexpected keyword argument 'identify'",
|
|
"output_type": "error",
|
|
"traceback": [
|
|
"\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
|
|
"\u001b[0;31mTypeError\u001b[0m Traceback (most recent call last)",
|
|
"Cell \u001b[0;32mIn[10], line 1\u001b[0m\n\u001b[0;32m----> 1\u001b[0m analysis_explorer \u001b[38;5;241m=\u001b[39m \u001b[43mmdisplay\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mAnalysisExplorer\u001b[49m\u001b[43m(\u001b[49m\u001b[43mmydict\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43midentify\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43msummary\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[43m)\u001b[49m\n\u001b[1;32m 2\u001b[0m analysis_explorer\u001b[38;5;241m.\u001b[39mrun_server(port\u001b[38;5;241m=\u001b[39m\u001b[38;5;241m8055\u001b[39m)\n",
|
|
"\u001b[0;31mTypeError\u001b[0m: __init__() got an unexpected keyword argument 'identify'"
|
|
]
|
|
}
|
|
],
|
|
"source": [
|
|
"analysis_explorer = mdisplay.AnalysisExplorer(mydict, identify=\"summary\")\n",
|
|
"analysis_explorer.run_server(port=8055)"
|
|
]
|
|
},
|
|
{
|
|
"attachments": {},
|
|
"cell_type": "markdown",
|
|
"metadata": {},
|
|
"source": [
|
|
"## Generate answers to free-form questions about images written in natural language. "
|
|
]
|
|
},
|
|
{
|
|
"attachments": {},
|
|
"cell_type": "markdown",
|
|
"metadata": {},
|
|
"source": [
|
|
"Set the list of questions as a list of strings:"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "code",
|
|
"execution_count": 11,
|
|
"metadata": {
|
|
"execution": {
|
|
"iopub.execute_input": "2023-07-03T12:17:22.513172Z",
|
|
"iopub.status.busy": "2023-07-03T12:17:22.512915Z",
|
|
"iopub.status.idle": "2023-07-03T12:17:22.516262Z",
|
|
"shell.execute_reply": "2023-07-03T12:17:22.515567Z"
|
|
}
|
|
},
|
|
"outputs": [],
|
|
"source": [
|
|
"list_of_questions = [\n",
|
|
" \"How many persons on the picture?\",\n",
|
|
" \"Are there any politicians in the picture?\",\n",
|
|
" \"Does the picture show something from medicine?\",\n",
|
|
"]"
|
|
]
|
|
},
|
|
{
|
|
"attachments": {},
|
|
"cell_type": "markdown",
|
|
"metadata": {},
|
|
"source": [
|
|
"Explore the analysis using the interface:"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "code",
|
|
"execution_count": 12,
|
|
"metadata": {
|
|
"execution": {
|
|
"iopub.execute_input": "2023-07-03T12:17:22.522018Z",
|
|
"iopub.status.busy": "2023-07-03T12:17:22.521409Z",
|
|
"iopub.status.idle": "2023-07-03T12:17:22.564237Z",
|
|
"shell.execute_reply": "2023-07-03T12:17:22.563271Z"
|
|
}
|
|
},
|
|
"outputs": [
|
|
{
|
|
"ename": "TypeError",
|
|
"evalue": "__init__() got an unexpected keyword argument 'identify'",
|
|
"output_type": "error",
|
|
"traceback": [
|
|
"\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
|
|
"\u001b[0;31mTypeError\u001b[0m Traceback (most recent call last)",
|
|
"Cell \u001b[0;32mIn[12], line 1\u001b[0m\n\u001b[0;32m----> 1\u001b[0m analysis_explorer \u001b[38;5;241m=\u001b[39m \u001b[43mmdisplay\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mAnalysisExplorer\u001b[49m\u001b[43m(\u001b[49m\u001b[43mmydict\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43midentify\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43msummary\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[43m)\u001b[49m\n\u001b[1;32m 2\u001b[0m analysis_explorer\u001b[38;5;241m.\u001b[39mrun_server(port\u001b[38;5;241m=\u001b[39m\u001b[38;5;241m8055\u001b[39m)\n",
|
|
"\u001b[0;31mTypeError\u001b[0m: __init__() got an unexpected keyword argument 'identify'"
|
|
]
|
|
}
|
|
],
|
|
"source": [
|
|
"analysis_explorer = mdisplay.AnalysisExplorer(mydict, identify=\"summary\")\n",
|
|
"analysis_explorer.run_server(port=8055)"
|
|
]
|
|
},
|
|
{
|
|
"attachments": {},
|
|
"cell_type": "markdown",
|
|
"metadata": {},
|
|
"source": [
|
|
"## Or directly analyze for further processing\n",
|
|
"Instead of inspecting each of the images, you can also directly carry out the analysis and export the result into a csv. This may take a while depending on how many images you have loaded."
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "code",
|
|
"execution_count": 13,
|
|
"metadata": {
|
|
"execution": {
|
|
"iopub.execute_input": "2023-07-03T12:17:22.572925Z",
|
|
"iopub.status.busy": "2023-07-03T12:17:22.572413Z",
|
|
"iopub.status.idle": "2023-07-03T12:19:12.624557Z",
|
|
"shell.execute_reply": "2023-07-03T12:19:12.621474Z"
|
|
}
|
|
},
|
|
"outputs": [],
|
|
"source": [
|
|
"for key in mydict:\n",
|
|
" mydict[key] = sm.SummaryDetector(mydict[key]).analyse_questions(list_of_questions)"
|
|
]
|
|
},
|
|
{
|
|
"attachments": {},
|
|
"cell_type": "markdown",
|
|
"metadata": {},
|
|
"source": [
|
|
"## Convert to dataframe and write csv\n",
|
|
"These steps are required to convert the dictionary of dictionarys into a dictionary with lists, that can be converted into a pandas dataframe and exported to a csv file."
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "code",
|
|
"execution_count": 14,
|
|
"metadata": {
|
|
"execution": {
|
|
"iopub.execute_input": "2023-07-03T12:19:12.655963Z",
|
|
"iopub.status.busy": "2023-07-03T12:19:12.655626Z",
|
|
"iopub.status.idle": "2023-07-03T12:19:12.673902Z",
|
|
"shell.execute_reply": "2023-07-03T12:19:12.672593Z"
|
|
}
|
|
},
|
|
"outputs": [],
|
|
"source": [
|
|
"outdict2 = mutils.append_data_to_dict(mydict)\n",
|
|
"df2 = mutils.dump_df(outdict2)"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "code",
|
|
"execution_count": 15,
|
|
"metadata": {
|
|
"execution": {
|
|
"iopub.execute_input": "2023-07-03T12:19:12.679448Z",
|
|
"iopub.status.busy": "2023-07-03T12:19:12.678774Z",
|
|
"iopub.status.idle": "2023-07-03T12:19:12.727513Z",
|
|
"shell.execute_reply": "2023-07-03T12:19:12.726494Z"
|
|
}
|
|
},
|
|
"outputs": [
|
|
{
|
|
"data": {
|
|
"text/html": [
|
|
"<div>\n",
|
|
"<style scoped>\n",
|
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|
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" vertical-align: middle;\n",
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|
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|
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|
|
" <thead>\n",
|
|
" <tr style=\"text-align: right;\">\n",
|
|
" <th></th>\n",
|
|
" <th>filename</th>\n",
|
|
" <th>How many persons on the picture?</th>\n",
|
|
" <th>Are there any politicians in the picture?</th>\n",
|
|
" <th>Does the picture show something from medicine?</th>\n",
|
|
" </tr>\n",
|
|
" </thead>\n",
|
|
" <tbody>\n",
|
|
" <tr>\n",
|
|
" <th>0</th>\n",
|
|
" <td>data/102141_2_eng.png</td>\n",
|
|
" <td>1</td>\n",
|
|
" <td>no</td>\n",
|
|
" <td>yes</td>\n",
|
|
" </tr>\n",
|
|
" <tr>\n",
|
|
" <th>1</th>\n",
|
|
" <td>data/106349S_por.png</td>\n",
|
|
" <td>1</td>\n",
|
|
" <td>yes</td>\n",
|
|
" <td>yes</td>\n",
|
|
" </tr>\n",
|
|
" <tr>\n",
|
|
" <th>2</th>\n",
|
|
" <td>data/102730_eng.png</td>\n",
|
|
" <td>2</td>\n",
|
|
" <td>no</td>\n",
|
|
" <td>yes</td>\n",
|
|
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|
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" </tbody>\n",
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|
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|
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],
|
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"text/plain": [
|
|
" filename How many persons on the picture? \\\n",
|
|
"0 data/102141_2_eng.png 1 \n",
|
|
"1 data/106349S_por.png 1 \n",
|
|
"2 data/102730_eng.png 2 \n",
|
|
"\n",
|
|
" Are there any politicians in the picture? \\\n",
|
|
"0 no \n",
|
|
"1 yes \n",
|
|
"2 no \n",
|
|
"\n",
|
|
" Does the picture show something from medicine? \n",
|
|
"0 yes \n",
|
|
"1 yes \n",
|
|
"2 yes "
|
|
]
|
|
},
|
|
"execution_count": 15,
|
|
"metadata": {},
|
|
"output_type": "execute_result"
|
|
}
|
|
],
|
|
"source": [
|
|
"df2.head(10)"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "code",
|
|
"execution_count": 16,
|
|
"metadata": {
|
|
"execution": {
|
|
"iopub.execute_input": "2023-07-03T12:19:12.734953Z",
|
|
"iopub.status.busy": "2023-07-03T12:19:12.734695Z",
|
|
"iopub.status.idle": "2023-07-03T12:19:12.743683Z",
|
|
"shell.execute_reply": "2023-07-03T12:19:12.743065Z"
|
|
}
|
|
},
|
|
"outputs": [],
|
|
"source": [
|
|
"df2.to_csv(\"data_out2.csv\")"
|
|
]
|
|
},
|
|
{
|
|
"cell_type": "code",
|
|
"execution_count": null,
|
|
"metadata": {},
|
|
"outputs": [],
|
|
"source": []
|
|
}
|
|
],
|
|
"metadata": {
|
|
"kernelspec": {
|
|
"display_name": "Python 3 (ipykernel)",
|
|
"language": "python",
|
|
"name": "python3"
|
|
},
|
|
"language_info": {
|
|
"codemirror_mode": {
|
|
"name": "ipython",
|
|
"version": 3
|
|
},
|
|
"file_extension": ".py",
|
|
"mimetype": "text/x-python",
|
|
"name": "python",
|
|
"nbconvert_exporter": "python",
|
|
"pygments_lexer": "ipython3",
|
|
"version": "3.9.17"
|
|
},
|
|
"vscode": {
|
|
"interpreter": {
|
|
"hash": "f1142466f556ab37fe2d38e2897a16796906208adb09fea90ba58bdf8a56f0ba"
|
|
}
|
|
}
|
|
},
|
|
"nbformat": 4,
|
|
"nbformat_minor": 4
|
|
}
|