---
title: Tools Index
type: index
status: stable
created: 2024-02-07
tags:
  - tools
  - development
  - research
semantic_relations:
  - type: organizes
    links:
      - [[development_tools]]
      - [[research_tools]]
---

# Tools Index

## Development Tools

### Core Tools
- [[tools/development/git|Git Version Control]]
- [[tools/development/vscode|Visual Studio Code]]
- [[tools/development/cursor|Cursor IDE]]

### Build Tools
- [[tools/build/cmake|CMake]]
- [[tools/build/make|Make]]
- [[tools/build/setuptools|Setuptools]]

### Package Management
- [[tools/package/pip|Pip]]
- [[tools/package/conda|Conda]]
- [[tools/package/poetry|Poetry]]

## Research Tools

### Analysis Tools
- [[tools/analysis/numpy|NumPy]]
- [[tools/analysis/scipy|SciPy]]
- [[tools/analysis/pandas|Pandas]]

### Machine Learning
- [[tools/ml/pytorch|PyTorch]]
- [[tools/ml/tensorflow|TensorFlow]]
- [[tools/ml/jax|JAX]]

### Visualization
- [[tools/visualization/matplotlib|Matplotlib]]
- [[tools/visualization/plotly|Plotly]]
- [[tools/visualization/tensorboard|TensorBoard]]

## Documentation Tools

### Writing Tools
- [[tools/documentation/obsidian|Obsidian]]
- [[tools/documentation/markdown|Markdown]]
- [[tools/documentation/sphinx|Sphinx]]

### API Documentation
- [[tools/api/pdoc|Pdoc]]
- [[tools/api/doxygen|Doxygen]]
- [[tools/api/pydoc|PyDoc]]

### Diagram Tools
- [[tools/diagrams/mermaid|Mermaid]]
- [[tools/diagrams/plantuml|PlantUML]]
- [[tools/diagrams/graphviz|Graphviz]]

## Testing Tools

### Unit Testing
- [[tools/testing/pytest|PyTest]]
- [[tools/testing/unittest|UnitTest]]
- [[tools/testing/doctest|DocTest]]

### Integration Testing
- [[tools/testing/tox|Tox]]
- [[tools/testing/github_actions|GitHub Actions]]
- [[tools/testing/jenkins|Jenkins]]

### Performance Testing
- [[tools/performance/profilers|Profilers]]
- [[tools/performance/benchmarks|Benchmarks]]
- [[tools/performance/monitoring|Monitoring]]

## Development Workflows

### Version Control
```bash
# Git workflow
git checkout -b feature/new-feature
git add .
git commit -m "Add new feature"
git push origin feature/new-feature
```

### Documentation
```bash
# Generate documentation
pdoc --html --output-dir docs/ src/
sphinx-build -b html docs/source/ docs/build/
```

### Testing
```bash
# Run tests
pytest tests/
tox
python -m unittest discover
```

## Research Workflows

### Data Analysis
```python
# Basic data analysis
import numpy as np
import pandas as pd
import matplotlib.pyplot as plt

data = pd.read_csv('data.csv')
results = analyze_data(data)
plot_results(results)
```

### Machine Learning
```python
# Basic PyTorch workflow
import torch
import torch.nn as nn

model = create_model()
optimizer = torch.optim.Adam(model.parameters())
train_model(model, optimizer, data)
```

### Visualization
```python
# Basic plotting
import matplotlib.pyplot as plt

plt.figure(figsize=(10, 6))
plt.plot(x, y, label='Data')
plt.legend()
plt.show()
```

## Tool Integration

### IDE Integration
- [[tools/integration/vscode_extensions|VSCode Extensions]]
- [[tools/integration/cursor_plugins|Cursor Plugins]]
- [[tools/integration/jupyter_extensions|Jupyter Extensions]]

### Framework Integration
- [[tools/integration/pytorch_tools|PyTorch Tools]]
- [[tools/integration/tensorflow_tools|TensorFlow Tools]]
- [[tools/integration/jax_tools|JAX Tools]]

### System Integration
- [[tools/integration/docker|Docker]]
- [[tools/integration/kubernetes|Kubernetes]]
- [[tools/integration/cloud|Cloud Services]]

## Tool Configuration

### Development Setup
```yaml
# VSCode settings
{
    "python.linting.enabled": true,
    "python.formatting.provider": "black",
    "editor.formatOnSave": true
}
```

### Testing Setup
```ini
# Tox configuration
[tox]
envlist = py38,py39,py310
isolated_build = True

[testenv]
deps = pytest
commands = pytest tests/
```

### Documentation Setup
```python
# Sphinx configuration
project = 'Project Name'
copyright = '2024'
author = 'Author Name'

extensions = [
    'sphinx.ext.autodoc',
    'sphinx.ext.napoleon'
]
```

## Related Resources

### Documentation
- [[docs/guides/tool_guides|Tool Guides]]
- [[docs/api/tool_api|Tool API]]
- [[docs/examples/tool_examples|Tool Examples]]

### Knowledge Base
- [[knowledge_base/development/tools|Development Tools]]
- [[knowledge_base/research/tools|Research Tools]]
- [[knowledge_base/documentation/tools|Documentation Tools]]

### Learning Resources
- [[learning_paths/tools|Tool Learning Path]]
- [[tutorials/tools|Tool Tutorials]]
- [[guides/tools/best_practices|Tool Best Practices]]