# Obsidian Usage Guide ## Overview Obsidian serves as our knowledge management system, providing powerful linking and visualization capabilities for cognitive modeling networks. ## Vault Structure ### Core Directories ``` 📁 knowledge_base/ # Main knowledge repository ├── agents/ # Agent definitions ├── beliefs/ # Belief networks ├── goals/ # Goal hierarchies ├── actions/ # Action repertoires ├── observations/ # Observation patterns └── relationships/ # Node relationships 📁 templates/ # Template definitions └── node_templates/ # Node type templates 📁 docs/ # Documentation ``` ## Node Types and Templates ### Core Node Types - [[agent_template]] - Agent definitions - [[belief_template]] - Belief structures - [[goal_template]] - Goal definitions - [[action_template]] - Action patterns - [[observation_template]] - Observation models - [[relationship_template]] - Node relationships See [[node_types]] for detailed specifications. ## Linking Patterns ### Internal Links - Use `[[filename]]` for direct links - Use `[[filename|alias]]` for custom link text - Reference [[linking_patterns]] for conventions ### Backlinks - Automatically tracked by Obsidian - View in right sidebar - Essential for [[network_analysis]] ## Knowledge Organization ### Tags Common tags: - #agent - #belief - #goal - #action - #observation - #relationship See [[tagging_guide]] for conventions. ### YAML Frontmatter ```yaml --- type: agent id: "agent_001" created: 2024-02-05 modified: 2024-02-05 tags: [agent, cognitive-model] aliases: [] --- ``` ## Visualization ### Graph View - Access via Graph View button - Shows knowledge network structure - Color-coded by [[node_types]] - Configurable layouts ### Filters - Filter by node type - Filter by tags - Filter by relationships - See [[visualization_guide]] ## Integration Features ### With Cursor - Markdown preview - Code block syntax highlighting - Integration with [[cursor_integration]] ### With Git - Version control integration - Collaboration features - See [[git_workflow]] ## Workflows ### Creating New Nodes 1. Use template hotkeys 2. Fill in frontmatter 3. Add content 4. Establish links See [[workflow_guides]] for details. ### Maintaining Networks - Regular updates - Link verification - Network analysis - See [[maintenance_guide]] ## Plugins and Extensions ### Core Plugins - Graph View - Backlinks - Tags - Templates ### Community Plugins - Dataview (for queries) - Calendar (for temporal tracking) - Mind Map (for hierarchies) ## Best Practices ### Organization - Use consistent naming - Maintain clean hierarchy - Follow [[template_guide]] - Regular [[maintenance_guide]] ### Linking - Be specific with links - Use bidirectional linking - Maintain link context - Follow [[linking_patterns]] ### Documentation - Keep notes updated - Use templates consistently - Follow [[documentation_guide]] ## Tips and Tricks ### Keyboard Shortcuts - `Ctrl/Cmd + O` - Quick switcher - `Ctrl/Cmd + E` - Toggle edit/preview - `[[` - Create link - See [[shortcuts_guide]] ### Search - Use tags for categorization - Use frontmatter for metadata - Full-text search available - See [[search_guide]] ## Troubleshooting ### Common Issues - Broken links - Template issues - Plugin conflicts See [[troubleshooting]] for solutions. ## Related Guides - [[getting_started]] - [[template_guide]] - [[network_analysis]] - [[maintenance_guide]] ## References - [Obsidian Documentation](https://help.obsidian.md) - [[code_organization]] - [[contribution_guide]] ## Advanced Features ### Graph Analysis Tools - [[network_metrics]] - Analyzing knowledge structure - Centrality measures - Clustering coefficients - Path analysis - [[graph_layouts]] - Visualization options - Force-directed - Hierarchical - Circular - [[graph_filtering]] - Custom views - Tag-based filters - Node type filters - Relationship filters ### Knowledge Management Patterns #### Information Architecture - [[information_architecture]] - Structural design - Hierarchical organization - Networked relationships - Semantic grouping - [[metadata_management]] - Content enrichment - YAML frontmatter - Custom properties - Automatic tracking - [[content_lifecycle]] - Document management - Creation workflows - Review processes - Archival procedures #### Advanced Linking - [[advanced_linking]] - Complex connections - Embedded links - Aliased references - Block references - [[transclusion_patterns]] - Content reuse - Block embedding - File embedding - Dynamic content - [[semantic_relationships]] - Meaning connections - Typed links - Relationship metadata - Semantic networks ### Automation and Scripting #### Custom Scripts - [[automation_scripts]] - Task automation - File creation - Content processing - Batch operations - [[templater_scripts]] - Dynamic templates - Context-aware templates - Dynamic content - Conditional logic - [[dataview_queries]] - Data extraction - Custom queries - Data visualization - Report generation #### Integration Points - [[api_integration]] - External connections - REST APIs - GraphQL endpoints - Webhook triggers - [[plugin_development]] - Custom extensions - Plugin architecture - API documentation - Development guides - [[automation_workflows]] - Process automation - GitHub Actions - Local scripts - Scheduled tasks ### Collaborative Features #### Multi-User Workflows - [[collaboration_patterns]] - Team practices - Shared repositories - Change management - Conflict resolution - [[review_workflows]] - Content review - Peer review process - Quality assurance - Version control - [[knowledge_sharing]] - Team learning - Best practices - Learning resources - Knowledge transfer #### Version Control - [[git_workflows]] - Source control - Branch management - Merge strategies - Conflict resolution - [[backup_strategies]] - Data protection - Automated backups - Recovery procedures - Redundancy planning - [[change_tracking]] - History management - Version history - Change logs - Audit trails ### Advanced Visualization #### Custom Views - [[custom_views]] - Specialized displays - Timeline views - Kanban boards - Mind maps - [[data_visualization]] - Information display - Charts and graphs - Data tables - Interactive diagrams - [[presentation_mode]] - Content sharing - Slide shows - Live presentations - Export formats #### Network Analysis - [[network_analysis]] - Graph analytics - Centrality metrics - Cluster analysis - Path optimization - [[visualization_techniques]] - Display methods - Layout algorithms - Color schemes - Interactive features - [[pattern_recognition]] - Structure analysis - Common patterns - Anti-patterns - Best practices ### System Integration #### Development Tools - [[ide_integration]] - Code editing - Cursor integration - VSCode workflow - Git support - [[build_tools]] - Project management - Task runners - Build scripts - Deploy processes - [[testing_framework]] - Quality assurance - Unit tests - Integration tests - Documentation tests #### External Tools - [[external_tools]] - Tool connections - Reference managers - Note-taking apps - Task managers - [[data_exchange]] - Information flow - Import/export - Sync protocols - Data migration - [[api_documentation]] - Interface specs - REST APIs - GraphQL schemas - WebSocket endpoints ## Performance Optimization ### Content Organization - [[content_structure]] - File organization - Directory layouts - Naming conventions - File grouping - [[indexing_strategies]] - Quick access - Search indexing - Tag systems - Metadata indexing - [[cache_management]] - Performance - File caching - Search caching - Graph caching ### Resource Management - [[resource_optimization]] - System efficiency - Memory usage - CPU utilization - Storage management - [[scaling_strategies]] - Growth handling - Large vaults - Many files - Complex graphs - [[backup_management]] - Data protection - Backup strategies - Recovery plans - Archive policies ## Security and Privacy ### Access Control - [[access_management]] - Permission systems - User roles - File permissions - Share settings - [[encryption_options]] - Data protection - File encryption - Key management - Secure sharing - [[audit_logging]] - Activity tracking - User actions - System events - Change history ### Data Protection - [[data_security]] - Information safety - Encryption methods - Secure storage - Safe sharing - [[privacy_controls]] - Information control - Data visibility - Access logging - Usage tracking - [[compliance_management]] - Regulation adherence - Data regulations - Privacy laws - Industry standards ## Maintenance and Support ### System Maintenance - [[maintenance_procedures]] - Upkeep tasks - Regular checks - Updates - Optimization - [[troubleshooting_guide]] - Problem solving - Common issues - Solutions - Prevention - [[support_resources]] - Help access - Documentation - Community - Professional support ### Documentation - [[documentation_standards]] - Writing guides - Style guides - Templates - Best practices - [[api_documentation]] - Interface docs - Endpoints - Parameters - Examples - [[user_guides]] - Usage docs - Tutorials - How-tos - Reference guides ## References and Resources ### Official Resources - [Obsidian Documentation](https://help.obsidian.md) - [Obsidian Forum](https://forum.obsidian.md) - [Obsidian Discord](https://discord.gg/obsidian) ### Community Resources - [[community_plugins]] - Plugin list - [[theme_gallery]] - Visual themes - [[snippet_library]] - Code snippets - [[template_collection]] - Template examples ### Learning Resources - [[tutorial_series]] - Learning guides - [[best_practices]] - Usage tips - [[example_vaults]] - Sample setups - [[video_tutorials]] - Visual guides ## Appendices ### Configuration Reference - [[config_options]] - Settings guide - [[hotkey_reference]] - Keyboard shortcuts - [[plugin_settings]] - Plugin configuration ### Template Library - [[note_templates]] - Content templates - [[frontmatter_templates]] - Metadata templates - [[script_templates]] - Code templates ### Glossary - [[terminology]] - Key terms - [[abbreviations]] - Common shortcuts - [[file_formats]] - Supported formats