# Cognitive Modeling Documentation

Welcome to the Cognitive Modeling documentation. This documentation is designed to be viewed in Obsidian for optimal navigation and knowledge linking.

## Directory Structure

### Core Documentation
- [[concepts/cognitive_modeling_concepts|Concepts]] - Core concepts and theoretical foundations
- [[guides/implementation_guides|Guides]] - Implementation guides and tutorials
- [[api/api_documentation|API]] - API reference documentation
- [[examples/usage_examples|Examples]] - Usage examples and tutorials
- [[tools/development_tools|Tools]] - Development tools and utilities
- [[templates/documentation_templates|Templates]] - Documentation templates

## Getting Started

### Essential Setup
- [[guides/installation_guide|Installation Guide]]
- [[guides/configuration_guide|Configuration Guide]]
- [[guides/quickstart_guide|Quick Start Guide]]

### Core Concepts
- [[concepts/plain_text_benefits|Plain Text Benefits]]
- [[concepts/machine_readability|Machine Readability]]
- [[concepts/research_education|Research and Education]]

### Documentation Usage
- [[guides/obsidian_linking|Obsidian Linking Guide]]
- [[guides/package_documentation|Package Documentation]]
- [[guides/pomdp_structure|POMDP Structure]]

## Development

### Implementation
- [[guides/model_implementation|Model Implementation]]
- [[guides/system_integration|System Integration]]
- [[guides/testing_guide|Testing Guide]]

### Tools
- [[tools/setup_tools|Setup Tools]]
- [[tools/development_tools|Development Tools]]
- [[tools/documentation_tools|Documentation Tools]]

### Examples
- [[examples/quickstart_example|Quick Start Example]]
- [[examples/basic_agent|Basic Agent]]
- [[examples/active_inference_basic|Active Inference]]

## Contributing

### Guidelines
- [[guides/contribution_guide|Contribution Guide]]
- [[guides/documentation_guide|Documentation Guide]]
- [[guides/style_guide|Style Guide]]

### Templates
- [[templates/concept_template|Concept Template]]
- [[templates/guide_template|Guide Template]]
- [[templates/example_template|Example Template]]

## Additional Resources

### References
- [[concepts/active_inference|Active Inference]]
- [[concepts/free_energy_principle|Free Energy Principle]]
- [[concepts/predictive_processing|Predictive Processing]]

### Tools
- [[tools/experiment_tools|Experiment Tools]]
- [[tools/analysis_tools|Analysis Tools]]
- [[tools/visualization_tools|Visualization Tools]]

## Support

### Help
- [[guides/troubleshooting|Troubleshooting]]
- [[guides/faq|FAQ]]
- [[guides/support|Support]]

### Community
- [[guides/community_guide|Community Guide]]
- [[guides/discussion|Discussion]]
- [[guides/feedback|Feedback]]