adding files

course_outline/course4-Data Literacy/README.md

@@ -26,6 +26,8 @@
 
 ## Concepts
 
+- [Misuse of Statistics](https://en.wikipedia.org/wiki/Category:Misuse_of_statistics)
+
 1. [Simpsons Paradox](https://plato.stanford.edu/entries/paradox-simpson/)
 2. [Probabilty Interpretations](https://en.wikipedia.org/wiki/Probability_interpretations)
 3. [Metadata](https://en.wikipedia.org/wiki/Metadata)
@@ -49,10 +51,6 @@
 21. [Evidence Based Practice Toolkit](https://libguides.winona.edu/ebptoolkit/Levels-Evidence)
 22. [Understanding Evidence-Based Public Health Policy](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2724448/)
 23. [NCBI Practitioners Guide](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3124652/)
-24. [An Introduction to Evidence Based Medicine](https://www.youtube.com/watch?v=P-G2veeYC1Q)
-25. [How to Appraise a Clinical Trial - Part 1](https://www.youtube.com/watch?v=lmbxnnjfnGs&t=1s)
-26. [How to Appraise a Clinical Trial - Part 2](https://www.youtube.com/watch?v=mjoxnQ-DpBI)
-27. [How to Appraise a Clinical Trial - Part 3](https://www.youtube.com/watch?v=OPTm9amQgEE)
 
 ## Problems
 
@@ -84,14 +82,12 @@
 26. [Berksons Paradox](https://en.wikipedia.org/wiki/Berkson%27s_paradox)
 27. [Regression Towards the Mean](https://en.wikipedia.org/wiki/Regression_toward_the_mean)
 28. [Processes](https://en.wikipedia.org/wiki/Process)
-29. 
+29. [Statistical Validity](https://en.wikipedia.org/wiki/Category:Validity_(statistics))
 30. [Statistical Hypothesis Testing](https://en.wikipedia.org/wiki/Category:Statistical_hypothesis_testing)
 31. [Hypotheses](https://en.wikipedia.org/wiki/Category:Hypotheses)
 32. [Precision_and_recall](https://en.wikipedia.org/wiki/Precision_and_recall)
 33. [Sensitivity_and_specificity](https://en.wikipedia.org/wiki/Sensitivity_and_specificity)
 34. [Causality](https://en.wikipedia.org/wiki/Category:Causality)
-35. [Misuse of Statistics](https://en.wikipedia.org/wiki/Category:Misuse_of_statistics)
-36. [Statistical Validity](https://en.wikipedia.org/wiki/Category:Validity_(statistics))
 
 ## Lessons
 
@@ -113,22 +109,7 @@
 12. [Epidemiology: Measure of Disease Frequency, Incidence and Prevalence](https://www.youtube.com/watch?v=9Jg4Dzdvv8M)
 13. [Errors in Hypothesis...Detail lecture](https://www.youtube.com/watch?v=UTS-x7StOcM)
 14. [What is Standardized Data?](https://www.youtube.com/watch?v=DOEstU62D4w)
-
-## Full Playlists
-
-1. [A Students Guide to Bayesian Statistics](https://www.youtube.com/playlist?list=PLwJRxp3blEvZ8AKMXOy0fc0cqT61GsKCG)
-2. [Factor Analysis and SEM](https://www.youtube.com/playlist?list=PLwJRxp3blEvaOTZfSKXysxRmi6gXJf5gP)
-3. [Bayesian Data Analysis](https://www.youtube.com/playlist?list=PLBqnAso5Dy7O0IVoVn2b-WtetXQk5CDk6)
-4. [Probability](https://www.youtube.com/playlist?list=PL2SOU6wwxB0uwwH80KTQ6ht66KWxbzTIo)
-5. [Probability Primer](https://www.youtube.com/playlist?list=PL17567A1A3F5DB5E4)
-6. [Towards Bayesian Regression](https://www.youtube.com/playlist?list=PLivJwLo9VCUISiuiRsbm5xalMbIwOHOOn)
-7. [Statistical Rethinking](https://www.youtube.com/playlist?list=PLDcUM9US4XdPz-KxHM4XHt7uUVGWWVSus)
-8. [Research Methods](https://www.youtube.com/playlist?list=PLzv58M2GAfm5rSt9jADvTf4i54O_5q7Qs)
-9. [Statistics for Applications](https://www.youtube.com/playlist?list=PLUl4u3cNGP60uVBMaoNERc6knT_MgPKS0)
-10. [Introduction to Epidemiology and Biostatistics](https://www.youtube.com/playlist?list=PLZ-wrYux2HNJOBKf79yJ_0z5lag1QC7I3)
-11. [Introduction to the Principles and Practice of Clinical Research](https://www.youtube.com/playlist?list=PLifjiEBb2Zq7ruvGhgyD2jDsgoaD3p6d4)
-12. [Introduction to Statistical Hypothesis Testing](https://www.youtube.com/playlist?list=PLvOh309NvHlFue0q5Ra6u1YnnoXlCCFtM)
-13. [Evidence Based Medicine Lectures](https://www.youtube.com/playlist?list=PLW52emRJoXhD5cG3kNmHXBXzZ0tyeLeep)
-14. [Measures of Association](https://www.youtube.com/playlist?list=PL6p7gIm6aWd_9v6s3Mu80tREbFy22NmdI)
-15. [Statistics for Beginners](https://www.youtube.com/playlist?list=PLqzoL9-eJTNAB5st3mtP_bmXafGSH1Dtz)
-16. [Quantitative Social Science Methods, I (Gov2001 at Harvard University)](https://youtube.com/playlist?list=PL0n492lUg2sgSevEQ3bLilGbFph4l92gH&si=1OycdmeydEkavVy3)
+15. [An Introduction to Evidence Based Medicine](https://www.youtube.com/watch?v=P-G2veeYC1Q)
+16. [How to Appraise a Clinical Trial - Part 1](https://www.youtube.com/watch?v=lmbxnnjfnGs&t=1s)
+17. [How to Appraise a Clinical Trial - Part 2](https://www.youtube.com/watch?v=mjoxnQ-DpBI)
+18. [How to Appraise a Clinical Trial - Part 3](https://www.youtube.com/watch?v=OPTm9amQgEE)

curent-papers/interests.md

@@ -0,0 +1,91 @@
+# Learning Path
+
+## My Current Interests
+
+1. [Software Engineering Institute](https://www.sei.cmu.edu/)
+2. [NIH Human Microbiome Project](https://hmpdacc.org/)
+3. [Complexity Economics](https://www.oxfordmartin.ox.ac.uk/programmes/economics), [Complexity Studies](https://complexsystemsupenn.com/), [Network Science](https://www.networkscienceinstitute.org/), and [Computational Social Science](https://science.gmu.edu/academics/departments-units/computational-data-sciences/computational-social-science-phd)
+    * [J. Doyne Farmer](http://www.doynefarmer.com/)
+    * [W. Brian Arthur](https://en.wikipedia.org/wiki/W._Brian_Arthur)
+    * [Robert Axtell](https://css1.gmu.edu/~axtell/Rob/Home.html)
+    * [Duncan J. Watts](https://duncanjwatts.com/)
+    * [Joshua M. Epstein](https://publichealth.nyu.edu/faculty/joshua-epstein)
+    * [Scott E Page](https://sites.lsa.umich.edu/scottepage/)
+    * [John Miller CMU](https://www.cmu.edu/dietrich/sds/people/faculty/john-miller.html)
+    * [Journal of Artificial Societies and Social Simulation](https://www.jasss.org/JASSS.html)
+    * [Ergodicity Economics](https://ergodicityeconomics.com/)
+    * [Econophysics](https://en.wikipedia.org/wiki/Econophysics)
+    * [Aaron Clauset](https://aaronclauset.github.io/)
+    * [Omar A. Guerrero (Alan Turing Institute)](https://oguerr.com/)
+    * [Imperial College Centre for Complexity Science](https://www.imperial.ac.uk/complexity-science/)
+    * [Center for Social Complexity](https://complexsystemstheory.net/centre-for-social-complexity-gmu/)
+    * [Professor Henrik Jeldtoft Jensen](https://www.ma.imperial.ac.uk/~hjjens/)
+    * [Santa Fe Institute Resources](https://www.complexityexplorer.org/explore/resources)
+    * [Neil Theise](https://www.neiltheiseofficial.com/)
+    * [David Krakauer](https://www.santafe.edu/people/profile/david-krakauer)
+    * [Stuart Kauffman](https://scholar.google.com/citations?user=yoPM0F8AAAAJ&hl=en)
+    * [Geoffrey West](https://www.santafe.edu/people/profile/geoffrey-west)
+    * [Raissa D'Souza](https://scholar.google.com/citations?user=jM23vRsKxuIC&hl=en)
+    * [Herbert Simon](https://en.wikipedia.org/wiki/Herbert_A._Simon)
+    * [Complexity Sciences Center](https://csc.ucdavis.edu/Welcome.html)
+    * [New England Complex Systems Institute](https://necsi.edu/)
+    * [Alicia Juarrero](https://aliciajuarrerodotcom1.wordpress.com/)
+    * [Computational Social Dynamics](https://picsolab.github.io/)
+    * [Computational Social Science Lab](https://dgarcia.eu/)
+    * [Harry Crane](https://www.harrycrane.com/)
+    * [Cole Mathis](https://colemathis.github.io/)
+    * [Robert Hanneman](https://faculty.ucr.edu/~hanneman/)
+4. [Swarm Engineering](https://hauertlab.com/) [Sabine Hauert](https://hauertlab.com/sabine-hauert/)
+    * [Radhika Nagpal](https://www.radhikanagpal.org/) at [SSR Princeton](https://ssr.princeton.edu/)
+    * [MIT Center for Bits and Atoms](http://cba.mit.edu/)
+    * [Simon Garnier](https://people.njit.edu/profile/garnier) and [Swarm Lab](https://www.theswarmlab.com/)
+    * [Swarm Intelligence](https://en.wikipedia.org/wiki/Swarm_intelligence) & [Collective Intelligence](https://en.wikipedia.org/wiki/Collective_intelligence) & [Bio Inspired Computing](https://en.wikipedia.org/wiki/Bio-inspired_computing) & [Evolutionary algorithms](https://en.wikipedia.org/wiki/Category:Evolutionary_algorithms)
+5. [Multi Agent Systems](https://en.wikipedia.org/wiki/Category:Multi-agent_systems) and [Game Theoretic Concepts](https://en.wikipedia.org/wiki/Category:Game_theory)
+    * [Prof. Dr. Felix Brandt](https://www.cs.cit.tum.de/en/dss/brandt/) and [Computational Social Choice
+](https://youtube.com/playlist?list=PLOfTMPqb4h4YpejIw7acMsdUnBm51a-FD&si=XztGrBLGOVUHST7q)
+    * [Tim Roughgarden](https://timroughgarden.org/) and [Algorithmic Game Theory](https://timroughgarden.org/f13/f13.html)
+    * [Leigh S Tesfatsion](https://faculty.sites.iastate.edu/tesfatsi/)
+6. [UCI Hot Cognition Laboratory](https://sites.uci.edu/peterdittolab/), [Questions of Ethics](https://www.ethicscenter.uci.edu/index.php), and [Peter Ditto's](https://scholar.google.com/citations?user=Lv4KzjIAAAAJ&hl=en) Work on Motivated Reasoning
+7. Dr. Ben Goldacre's Investigation and [Simine Vazire's](https://www.simine.com/) into [badscience](https://www.badscience.net/) and the Replication Crisis. Ways of Improving research reliability:
+    * [datacarpentry.org](https://datacarpentry.org/)
+    * [software-carpentry.org](https://software-carpentry.org/)
+    * [Data Provenance Research Group](https://www.eva.mpg.de/ecology/projects-and-research-groups/data-provenance/)
+    * [Meta-Research Innovation Center at Stanford](https://metrics.stanford.edu/)
+    * [DataColada](https://datacolada.org/)
+8. [Biological Engineering](https://en.wikipedia.org/wiki/Category:Biological_engineering)
+    * [Center for Algorithmic Biotechnology](https://cab.spbu.ru/)
+    * [Developmental bioelectricity](https://en.wikipedia.org/wiki/Developmental_bioelectricity)
+    * [Michael Levin](https://drmichaellevin.org/)
+9. Cultural Evolution: [Richard McElreath](https://xcelab.net/rm/) and [Joseph Henrich](https://heb.fas.harvard.edu/people/joseph-henrich)
+10. Causal Inference
+    * [Donald Rubin](https://en.wikipedia.org/wiki/Donald_Rubin)
+    * [Guido W. Imbens](https://www.gsb.stanford.edu/faculty-research/faculty/guido-w-imbens)
+    * [marcelo-perraillon](https://clas.ucdenver.edu/marcelo-perraillon/)
+    * [Clark Glymour](https://philpeople.org/profiles/clark-glymour)
+    * [Judea Pearl](https://bayes.cs.ucla.edu/jp_home.html)
+11. [Decision Science Institute](https://decisionsciences.org/) and [The Decision Lab](https://thedecisionlab.com/) especially under [VUCA](https://en.wikipedia.org/wiki/VUCA) conditions
+    * [Principal Agent Problems](https://en.wikipedia.org/wiki/Principal%E2%80%93agent_problem)
+    * [Collective_action_problem](https://en.wikipedia.org/wiki/Collective_action_problem)
+    * [Asymmetric Risk](https://asymmetryobservations.com/definitions/asymmetry/asymmetrical-riskreward/)
+    * [Applied Decision Science](https://www.applieddecisionscience.com/)
+    * [Decision theory](https://en.wikipedia.org/wiki/Category:Decision_theory)
+    * [Decision Research](https://www.decisionresearch.org/) & [Paul Slovic](https://en.wikipedia.org/wiki/Paul_Slovic)
+    * [Game Theory](https://en.wikipedia.org/wiki/Category:Game_theory)
+    * [MIT Institute for Data Systems and Society](https://idss.mit.edu/research/)
+12. [Ray Jackendoff](https://en.wikipedia.org/wiki/Ray_Jackendoff) from the [Center for Cognitive Linguistics](https://sites.tufts.edu/cogstud/) and [George Lakoff](https://george-lakoff.com/),  [Cognitive Science](https://en.wikipedia.org/wiki/Category:Cognitive_science) and [Kenneth D. Forbus](https://users.cs.northwestern.edu/~forbus/) and [Cognitive Modeling](https://en.wikipedia.org/wiki/Cognitive_model)
+    * [Concepts and Cognition Lab](https://cognition.princeton.edu/)
+    * [Center for Brains Minds and Machines](https://cbmm.mit.edu/)
+13. [Extended Evolutionary Synthesis](https://extendedevolutionarysynthesis.com/)
+14. [Society of Research Software Engineering](https://society-rse.org/)
+15. [Journal of Applied Ontology](https://ip.ios.semcs.net/journals/applied-ontology/Pre-press/Pre-press)
+16. [Richard Gill](https://gill1109.com/?amp=1) [Statistics](https://www.math.leidenuniv.nl/~gill/)
+17. [Society for Industrial and Applied Mathematics](https://www.siam.org/)
+18. [Systems Science Institutes](https://en.wikipedia.org/wiki/Category:Systems_science_institutes)
+    * [International Society for System Sciences](https://www.isss.org/home/)
+    * [System Dynamics Society](https://systemdynamics.org/)
+    * [IEEE Systems Council](https://ieeesystemscouncil.org/)
+    * [International Institute for Applied Systems Analysis](https://iiasa.ac.at/)
+    * [Association for Computing Machinery](https://www.acm.org/)
+    * [Association for IT Architects](https://iasaglobal.org/)
+    * [International Software Benchmarking Standards Group](https://www.isbsg.org/)
+19. [The Information Philosopher](https://www.informationphilosopher.com/)