// fomalibconf.h

struct apply_handle {

    int ptr;
    int curr_ptr; 
    int ipos;
    int opos;
    int mode;
    int printcount;
    int *numlines;
    int *statemap; 
    int *marks;

    struct sigma_trie {
	int signum;
	struct sigma_trie *next;
    } *sigma_trie;

    struct sigmatch_array {
	int signumber ;
	int consumes ;
    } *sigmatch_array;

    struct sigma_trie_arrays {
	struct sigma_trie *arr;
	struct sigma_trie_arrays *next;
    } *sigma_trie_arrays;

    int binsearch;
    int indexed;
    int state_has_index;
    int sigma_size;
    int sigmatch_array_size;
    int current_instring_length;
    int has_flags;
    int obey_flags;
    int show_flags;
    int print_space;
    char *space_symbol;
    char *separator;
    char *epsilon_symbol;
    int print_pairs;
    int apply_stack_ptr;
    int apply_stack_top; 
    int oldflagneg;
    int outstringtop;
    int iterate_old;
    int iterator;
    uint8_t *flagstates;
    char *outstring;
    char *instring;
    struct sigs {
	char *symbol;
	int length;
    } *sigs;
    char *oldflagvalue;
    
    struct fsm *last_net;
    struct fsm_state *gstates;
    struct sigma *gsigma;
    struct apply_state_index {
	int fsmptr;
	struct apply_state_index *next;
    } **index_in, **index_out, *iptr;

    struct flag_list {
	char *name;
	char *value;
	short neg;
	struct flag_list *next;	
    } *flag_list;

    struct flag_lookup {
	int type;
	char *name;
	char *value;
    } *flag_lookup ;

    struct searchstack {
	int offset;
	struct apply_state_index *iptr;
	int state_has_index;
	int opos;
	int ipos;
	int visitmark;
	char *flagname;
	char *flagvalue;
	int flagneg;
    } *searchstack ;
};


// apply.c

struct apply_handle *apply_init(struct fsm *net) {
    struct apply_handle *h;

    srand((unsigned int) time(NULL));
    h = calloc(1,sizeof(struct apply_handle));
    /* Init */

    h->iterate_old = 0;
    h->iterator = 0;
    h->instring = NULL;
    h->flag_list = NULL;
    h->flag_lookup = NULL;
    h->obey_flags = 1;
    h->show_flags = 0;
    h->print_space = 0;
    h->print_pairs = 0;
    h->separator = strdup(":");
    h->epsilon_symbol = strdup("0");
    h->last_net = net;
    h->outstring = xxmalloc(sizeof(char)*DEFAULT_OUTSTRING_SIZE);
    h->outstringtop = DEFAULT_OUTSTRING_SIZE;
    *(h->outstring) = '\0';
    h->gstates = net->states;
    h->gsigma = net->sigma;
    h->printcount = 1;
    apply_create_statemap(h, net);
    h->searchstack = xxmalloc(sizeof(struct searchstack) * DEFAULT_STACK_SIZE);
    h->apply_stack_top = DEFAULT_STACK_SIZE;
    apply_stack_clear(h);
    apply_create_sigarray(h, net);
    return(h);
}

void apply_create_statemap(struct apply_handle *h, struct fsm *net) {
    int i;
    struct fsm_state *fsm;
    fsm = net->states;
    h->statemap = xxmalloc(sizeof(int)*net->statecount);
    h->marks = xxmalloc(sizeof(int)*net->statecount);
    h->numlines = xxmalloc(sizeof(int)*net->statecount);

    for (i=0; i < net->statecount; i++) {
	*(h->numlines+i) = 0;  /* Only needed in binary search */
	*(h->statemap+i) = -1;
	*(h->marks+i) = 0;
    }
    for (i=0; (fsm+i)->state_no != -1; i++) {
	*(h->numlines+(fsm+i)->state_no) = *(h->numlines+(fsm+i)->state_no)+1;
	if (*(h->statemap+(fsm+i)->state_no) == -1) {
	    *(h->statemap+(fsm+i)->state_no) = i;
	}
    }
}

void apply_stack_clear (struct apply_handle *h) {
    h->apply_stack_ptr = 0;
}

void apply_create_sigarray(struct apply_handle *h, struct fsm *net) {
    struct sigma *sig;
    int i, maxsigma;
    
    maxsigma = sigma_max(net->sigma);
    h->sigma_size = maxsigma+1;
    // Default size created at init, resized later if necessary
    h->sigmatch_array = xxcalloc(1024,sizeof(struct sigmatch_array));
    h->sigmatch_array_size = 1024;

    h->sigs = xxmalloc(sizeof(struct sigs)*(maxsigma+1));
    h->has_flags = 0;
    h->flag_list = NULL;

    /* Malloc first array of trie and store trie ptrs to be able to free later */
    /* when apply_clear() is called.                                           */

    h->sigma_trie = xxcalloc(256,sizeof(struct sigma_trie));
    h->sigma_trie_arrays = xxmalloc(sizeof(struct sigma_trie_arrays));
    h->sigma_trie_arrays->arr = h->sigma_trie;
    h->sigma_trie_arrays->next = NULL;

    for (i=0;i<256;i++)
	(h->sigma_trie+i)->next = NULL;
    for (sig = h->gsigma; sig != NULL && sig->number != -1; sig = sig->next) {
	if (flag_check(sig->symbol)) {
	    h->has_flags = 1;
	    apply_add_flag(h, flag_get_name(sig->symbol));
	}
	(h->sigs+(sig->number))->symbol = sig->symbol;
	(h->sigs+(sig->number))->length = strlen(sig->symbol);
	/* Add sigma entry to trie */
	if (sig->number > IDENTITY) {
	    apply_add_sigma_trie(h, sig->number, sig->symbol, (h->sigs+(sig->number))->length);
	}
    }
    if (maxsigma >= IDENTITY) {
	(h->sigs+EPSILON)->symbol = h->epsilon_symbol;
	(h->sigs+EPSILON)->length =  strlen(h->epsilon_symbol);
	(h->sigs+UNKNOWN)->symbol = "?";
	(h->sigs+UNKNOWN)->length =  1;
	(h->sigs+IDENTITY)->symbol = "@";
	(h->sigs+IDENTITY)->length =  1;
    }
    if (h->has_flags) {

	h->flag_lookup = xxmalloc(sizeof(struct flag_lookup)*(maxsigma+1));
	for (i=0; i <= maxsigma; i++) {
	    (h->flag_lookup+i)->type = 0;
	    (h->flag_lookup+i)->name = NULL;
	    (h->flag_lookup+i)->value = NULL;
	}
	for (sig = h->gsigma; sig != NULL ; sig = sig->next) {
	    if (flag_check(sig->symbol)) {
		(h->flag_lookup+sig->number)->type = flag_get_type(sig->symbol);
		(h->flag_lookup+sig->number)->name = flag_get_name(sig->symbol);
		(h->flag_lookup+sig->number)->value = flag_get_value(sig->symbol);		
	    }
	}
	apply_mark_flagstates(h);
    }
}

// clb ??? further


char *apply_up(struct apply_handle *h, char *word) {

    h->mode = UP;
    if (h->index_out) {
	h->indexed = 1;
    } else {
	h->indexed = 0;
    }
    h->binsearch = (h->last_net->arcs_sorted_out == 1) ? 1 : 0;
    return(apply_updown(h, word));
}

char *apply_updown(struct apply_handle *h, char *word) {

    char *result = NULL;

    if (h->last_net == NULL || h->last_net->finalcount == 0)
        return (NULL);
    
    if (word == NULL) {
        h->iterate_old = 1;
        result = apply_net(h); // clb???
    }
    else if (word != NULL) {
        h->iterate_old = 0;
        h->instring = word;
        apply_create_sigmatch(h); // clb???

	/* Remove old marks if necessary TODO: only pop marks */
	apply_force_clear_stack(h); // clb???
        result = apply_net(h);
    }
    return(result);
}